CellMig-class: The CellMig Class.

In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

The CellMig class represents objects storing all information for both random migration (RM) and wound scratch assay (WSA). It comprises 14 slots.

Usage

CellMig(..., ExpName = NULL)

## S4 method for signature 'CellMig'
initialize(.Object, trajdata)

CellMig(..., ExpName = NULL)

Arguments

...	arguments to pass to the CellMig constructor
ExpName	string, experiment name (optional)
.Object	the CellMig object being built
trajdata	data frame including trajectory data

Value

An S4-class object

a CellMig object

Slots

trajdata

The raw trajectory data matrix organized into four columns: cell ID, X coordinates, Y coordinates and Track number, which is the track's path order.

adjDS

A data frame of the trajectory data passed from the WSAprep function.

cellpos

A binary vector showing on which side of the wound cells are located. "0" refers to a cell located above the wound whereas "1" refers to a cell located below the wound.

parE

A numeric vector contains estimations for the imageH, woundH, upperE and lowerE.

preprocessedDS

list object of data frames, each data frame shows the trajectories of a single cell.

DRtable

A data frame of the results of running the DiRatio() function.

MSDtable

A data frame of the results of running the MSD() function.

PerAanSpeedtable

A data frame of the results of running the PerAndSpeed() function.

DACtable

A data frame of the results of running the DiAutoCor() function.

VACtable

A data frame of the results of running the VeAutoCor() function.

ForMigtable

A data frame of the results of running the ForwardMigration() function.

FMItable

A data frame of the results of running the FMI() function.

results

A data frame of all the results.

parCor

A data frame for Parameters Correlation.

meta

A list including experiment name, meta data and other information.

Author(s)

Salim Ghannoum [e-mail]

Examples

data("TrajectoryDataset")
CellMig(TrajectoryDataset)

ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.