Files in ocbe-uio/cellmigRation
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Makefile
NAMESPACE
NEWS.md
R/all_classes.R
R/all_extra.R
R/all_functions_v8.R
R/all_internal_v3.R
R/all_methods_v3.R
README
README.Rmd
README.md
Shinyapp/server.R
Shinyapp/ui.R
cell_migration_logo.png
data/ThreeConditions.rda
data/TrackCellsDataset.rda
data/TrajectoryDataset.rda
data/WSADataset.rda
data/preProcCellMig.rda
inst/unitTests/test_cellmigRation_core.R
inst/unitTests/test_funcion_examples.R
man/AddDimension.Rd
man/CellMig-class.Rd
man/CellMigPCA.Rd
man/CellMigPCAclust.Rd
man/CellMigPCAclustALL.Rd
man/CellTracker.Rd
man/CellTrackerMainLoop.Rd
man/CentroidArray.Rd
man/CentroidValidation.Rd
man/ComputeTracksStats.Rd
man/DetectRadii.Rd
man/DiAutoCor.Rd
man/DiRatio.Rd
man/DiRatioPlot.Rd
man/EstimateDiameterRange.Rd
man/FMI.Rd
man/FianlizeOptiParams.Rd
man/FilterTrackedCells.Rd
man/FinRes.Rd
man/ForwardMigration.Rd
man/GenAllCombos.Rd
man/LinearConv2.Rd
man/LoadTiff.Rd
man/MSD.Rd
man/MakeHypercube.Rd
man/MigrationStats.Rd
man/NextOdd.Rd
man/NonParallel4OptimizeParams.Rd
man/NonParallelTrackLoop.Rd
man/OptimizeParams.Rd
man/OptimizeParamsMainLoop.Rd
man/Parallel4OptimizeParams.Rd
man/ParallelTrackLoop.Rd
man/PerAndSpeed.Rd
man/PlotTracksSeparately.Rd
man/PostProcessTracking.Rd
man/Prep4OptimizeParams.Rd
man/ThreeConditions.Rd
man/TrackCellsDataset.Rd
man/TrajectoryDataset.Rd
man/ValidateTrackingArgs.Rd
man/VeAutoCor.Rd
man/VisualizeCntr.Rd
man/VisualizeImg.Rd
man/VisualizeStackCentroids.Rd
man/WSADataset.Rd
man/aggregateFR.Rd
man/aggregateTrackedCells.Rd
man/bpass.Rd
man/cellmigRation-package.Rd
man/circshift.Rd
man/cntrd.Rd
man/fixDA.Rd
man/fixExpName.Rd
man/fixFM1.Rd
man/fixFM2.Rd
man/fixFM3.Rd
man/fixFM4.Rd
man/fixFM5.Rd
man/fixFM6.Rd
man/fixID1.Rd
man/fixID2.Rd
man/fixID3.Rd
man/fixID4.Rd
man/fixID5.Rd
man/fixID6.Rd
man/fixMSD.Rd
man/fixPER1.Rd
man/fixPER2.Rd
man/fixPER3.Rd
man/getAvailableAggrMetrics.Rd
man/getCellImages.Rd
man/getCellMigSlot.Rd
man/getCellTrackMeta.Rd
man/getCellTrackStats.Rd
man/getCellTracks.Rd
man/getCellsMeta.Rd
man/getCellsStats.Rd
man/getDACtable.Rd
man/getDiRatio.Rd
man/getFMItable.Rd
man/getForMigtable.Rd
man/getImageCentroids.Rd
man/getImageStacks.Rd
man/getMSDtable.Rd
man/getOptimizedParameters.Rd
man/getOptimizedParams.Rd
man/getPerAndSpeed.Rd
man/getPopulationStats.Rd
man/getProcessedImages.Rd
man/getProcessingStatus.Rd
man/getResults.Rd
man/getTracks.Rd
man/getVACtable.Rd
man/initializeTrackParams.Rd
man/innerBondRaster.Rd
man/internalPermutation.Rd
man/matfix.Rd
man/nontrivialBondTracking.Rd
man/pkfnd.Rd
man/plot3DAllTracks.Rd
man/plot3DTracks.Rd
man/plotAllTracks.Rd
man/plotSampleTracks.Rd
man/preProcCellMig.Rd
man/rmPreProcessing.Rd
man/runTrackingPermutation.Rd
man/setAnalyticParams.Rd
man/setCellMigSlot.Rd
man/setCellTracks.Rd
man/setCellsMeta.Rd
man/setExpName.Rd
man/setOptimizedParams.Rd
man/setProcessedImages.Rd
man/setProcessingStatus.Rd
man/setTrackedCellsMeta.Rd
man/setTrackedCentroids.Rd
man/setTrackedPositions.Rd
man/setTrackingStats.Rd
man/sinkAway.Rd
man/subNetworkTracking.Rd
man/track.Rd
man/trackHypercubeBuild.Rd
man/trackSlideProcessing.Rd
man/trackSlideWrapUp.Rd
man/trackedCells-class.Rd
man/trivialBondRaster.Rd
man/trivialBondTracking.Rd
man/visualizeCellTracks.Rd
man/visualizeTrcks.Rd
man/warnMessage.Rd
man/wsaPreProcessing.Rd
tests/runTests.R
vignettes/cellmigRation.Rmd
