plotAllTracks: A 2D rose-plot

In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

Plotting the trajectory data of all cells.

Usage

plotAllTracks(
  object,
  Type = "l",
  FixedField = TRUE,
  export = FALSE,
  ExpName = NULL
)

Arguments

object	CellMig class object, which is a list of data frames resulted from the PreProcessing.
Type	has to be one of the following: c("p", "l", "b", "o") "p": Points; "l": Lines; "b": Both; "o": Both "overplotted".
FixedField	logical(1) Allows generating a plot with fixed field 800um x 800um. Default is TRUE.
export	if 'TRUE' (default), exports plot to JPG file
ExpName	string, name of the experiment. Can be NULL

Details

The visualization shows centered trajectories where the starting point of each track is located at the origin of the coordinate system (X=0,Y=0).

Value

A 2D rose-plot showing the tracks of all cells.

Author(s)

Salim Ghannoum [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

rmTD <- get(data(preProcCellMig))
plotAllTracks(object=rmTD, Type="l", FixedField=TRUE,export=FALSE)

ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.