aggregateFR: Aggregating the outcome of several experiments or conditions.

In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

Aggregate two or more CellMig-class objects together. Input objects must carry information of trajectory analyses (otherwise an error will be raised). All trajectory results form the different experiments/conditions are returned in two data frames.

Usage

aggregateFR(x, ..., export = FALSE)

Arguments

x	CellMig class object, which is a list of data frames resulted from the PreProcessing.
...	one or more CellMig-class object(s) where cells' trajectories have already been analyzed.
export	if 'TRUE' (default), exports function output to CSV file

Details

The visualization shows centered trajectories where the starting point of each track is located at the origin of the coordinate system (X=0,Y=0).

Value

two data frames: The first data frame shows the average of each parameter per experiment/condition. The second data frame shows the parameters of individual cells of all experiments/conditions.

Author(s)

Damiano Fantini and Salim Ghannoum [e-mail] Damiano Fantini, [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

data(WSADataset)
wasDF1 <- WSADataset[seq(1,300,by=1), ]
wsaTD1 <- CellMig(wasDF1)
wsaTD1 <- wsaPreProcessing(wsaTD1,FrameN=55)
wsaTD1 <-FMI(wsaTD1,TimeInterval=10)
wsaTD1 <-FinRes(wsaTD1,ParCor=FALSE, export=FALSE)
wasDF2 <- WSADataset[seq(500,700,by=1), ]
wsaTD2 <- CellMig(wasDF2)
wsaTD2 <- wsaPreProcessing(wsaTD2,FrameN=55)
wsaTD2 <-FMI(wsaTD2,TimeInterval=10)
wsaTD2 <-FinRes(wsaTD2,ParCor=FALSE, export=FALSE)
AGG<-aggregateFR(wsaTD1 ,wsaTD2 ,export=FALSE)

ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.