fixFM6: Forward Migration Sixst Part

In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

This function is a part of the ForwardMigration function, which generates data and plots for forward persistence and speed.

Usage

fixFM6(
  Object,
  FMResultsTable,
  Step,
  sfptPLOT,
  afptPLOT,
  export,
  color,
  TimeInterval,
  sfpPLOT,
  ExpName,
  new.fld
)

Arguments

FMResultsTable	A data frame resulted from the fixFM6().
Step	A numeric value of the number of trajectory steps.
sfptPLOT	A logical vector that allows generating individual plots of persistence time vs speed per cell. Default is TRUE.
afptPLOT	A logical vector that allows generating a plot of persistence time vs speed for all cells. Default is TRUE.
export	if 'TRUE' (default), exports function output to CSV file
color	A vector of colors that will be used for the plots
TimeInterval	A numeric value of the time elapsed between successive frames in the time-lapse stack.
sfpPLOT	A logical vector that allows generating individual plots of angular persistence vs speed per cell. Default is TRUE.
ExpName	String, name of the experiment
new.fld	path to the folder where to save files
object	CellMig class object, which is a list of data frames resulted from the PreProcessing.

Value

A data frame named "FMResultsTable".

Author(s)

Salim Ghannoum [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

cellmigRation:::fixFM6(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1)

ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.