ComputeTracksStats: Compute Tracks Stats

In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

Wrapper for the MigrationStats() function. It computes statistics for a trackedCells object where cells have already been tracked.

Usage

ComputeTracksStats(tc_obj, time_between_frames, resolution_pixel_per_micron)

Arguments

tc_obj	a trackedCells object
time_between_frames	integer, time interval between two successive frames were taken
resolution_pixel_per_micron	integer, image resolution, i.e. number of pixels per micron

Value

a trackedCells object, including cell track statistics

Author(s)

Damiano Fantini, [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/ https://www.mathworks.com/matlabcentral/fileexchange/60349-fasttracks

Examples

x <- get(data(TrackCellsDataset))
x <- ComputeTracksStats(x, time_between_frames = 10,
                        resolution_pixel_per_micron = 20)
getCellsStats(x)

ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.