visualizeCellTracks: Visualize Cell Tracks originating at an Image Stack

In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

Visualize Cell Tracks that originated at an Image Stack of interest

Usage

visualizeCellTracks(
  tc_obj,
  stack = 1,
  pnt.cex = 1.2,
  lwd = 1.6,
  col = "red2",
  col.untracked = "gray45",
  main = NULL
)

Arguments

tc_obj	a trackedCells object
stack	index of the stack
pnt.cex	cex of the point drawn around each cell
lwd	width of the lines visualizing cell tracks
col	color of the points and the tracks, e.g.: "red2"
col.untracked	color of the points that were not tracked further, e.g.: "gray45"
main	string used as plot title, can be NULL

Value

None

Author(s)

Damiano Fantini, [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/ https://www.mathworks.com/matlabcentral/fileexchange/60349-fasttracks

Examples

x <- get(data(TrackCellsDataset))
visualizeCellTracks(tc_obj = x, stack = 2)

ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.