rmPreProcessing: Data preprocessing for random migration (RM)

In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

This function allows preprocessing of the trajectory data from random migration (RM) experiments.

Usage

rmPreProcessing(
  object,
  PixelSize = 1.24,
  TimeInterval = 10,
  FrameN = NULL,
  ExpName = NULL
)

Arguments

object	CellMig class object.
PixelSize	A numeric value of the physical size of a pixel. Default is 1.24.
TimeInterval	A numeric value of the time elapsed between successive frames in the time-lapse stack. Default is 10 min.
FrameN	A numeric value of the number of frames. Default is NULL
ExpName	string, name of the experiment. Can be NULL

Value

An CellMig class object with preprocessed data.

Author(s)

Salim Ghannoum [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

TrajectoryDataset <- get(data(TrajectoryDataset))
rmDF=TrajectoryDataset[seq(1,40,by=1),]
rmTD <- CellMig(rmDF)
rmTD <- rmPreProcessing(rmTD, FrameN=30)

ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.