trackedCells-class: The trackedCells Class.
In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

An S4 class to represent a set of cells whose movements were tracked over time.

1 2	## S4 method for signature 'trackedCells' initialize(.Object, x)

`.Object`	the trackedCells object being built
`x`	imported TIFF image data

An S4-class object

a trackedCells object

images: is a list of imported images
proc_images: is a list of processed images
ops: is a list keeping track of the operations executed on the object
optimized: is a list including results of the params auto-optimization (optional)
centroids: is a list of detected centroids
positions: is a data.frame of cell positions across stacks
tracks: is a numeric matrix of cell tracks
params: is a list of parameters used for the analysis
stats: is a list of stats computed for the cell tracks
metadata: is a list including labels about the image, and the experiment

ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.

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