getMSDtable: Getting the Mean Square Displacement
In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
Description
Usage
Arguments
Value
Author(s)
References
Examples
View source: R/all_functions_v8.R
Description
The MSD function automatically computes the
mean square displacements across several sequential time intervals.
MSD parameters are used to assess the area explored by cells over
time.
Usage
1
getMSDtable(object)
Arguments
object
CellMig class object, which is a list of data
frames resulted from the PreProcessing.
Value
A data frame of MSD values.
Author(s)
Salim Ghannoum salim.ghannoum@medisin.uio.no
References
https://www.data-pulse.com/dev_site/cellmigration/
Examples
1
2
3
4
5
6
data(TrajectoryDataset)
rmDF <- TrajectoryDataset[seq(1,600,by=1), ]
rmTD <- CellMig(rmDF)
rmTD <- rmPreProcessing(rmTD,FrameN=100)
rmTD <- MSD(rmTD, sLAG=0.25, ffLAG=0.25, export=FALSE)
head(getMSDtable(rmTD))
ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.
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Description Usage Arguments Value Author(s) References Examples
View source: R/all_functions_v8.R
Description
The MSD function automatically computes the mean square displacements across several sequential time intervals. MSD parameters are used to assess the area explored by cells over time.
Usage
1 | getMSDtable(object)
|
Arguments
object |
|
Value
A data frame of MSD values.
Author(s)
Salim Ghannoum salim.ghannoum@medisin.uio.no
References
https://www.data-pulse.com/dev_site/cellmigration/
Examples
1 2 3 4 5 6 | data(TrajectoryDataset)
rmDF <- TrajectoryDataset[seq(1,600,by=1), ]
rmTD <- CellMig(rmDF)
rmTD <- rmPreProcessing(rmTD,FrameN=100)
rmTD <- MSD(rmTD, sLAG=0.25, ffLAG=0.25, export=FALSE)
head(getMSDtable(rmTD))
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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