plotSampleTracks: A 2D rose-plot of sample cells

In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

Plotting the trajectory data of some cells.

Usage

plotSampleTracks(
  object,
  Type = "l",
  celNum = 35,
  FixedField = TRUE,
  export = FALSE,
  ExpName = NULL
)

Arguments

object	CellMig class object, which is a list of data frames resulted from the PreProcessing.
Type	has to be one of the following: c("p", "l", "b", "o")
celNum	A numeric value showing the desired number of cells to be plotted.
FixedField	logical(1) Allows generating a plot with fixed field 800um x 800um. Default is TRUE.
export	if 'TRUE' (default), exports plot to JPG file "p": Points; "l": Lines; "b": Both; "o": Both "overplotted".
ExpName	string, name of the experiment. Can be NULL

Details

The visualization shows centered trajectories where the starting point of each track is located at the origin of the coordinate system (X=0,Y=0).

Value

A 2D rose-plot showing the tracks of sample cells selected randomly based on the desired number of cells selected by the user.

Author(s)

Salim Ghannoum [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

preProcCellMig <- get(data(preProcCellMig))
plotSampleTracks(preProcCellMig, Type="l", FixedField=TRUE,
                 celNum=5, export=FALSE, ExpName = NULL)

ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.