PerAndSpeed: Persistence and Speed

In ocbe-uio/cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

The PerAndSpeed() generates data and plots for persistence and speed.

Usage

PerAndSpeed(
  object,
  TimeInterval = 10,
  PtSplot = TRUE,
  AllPtSplot = TRUE,
  ApSplot = TRUE,
  AllApSplot = TRUE,
  export = FALSE,
  ExpName = NULL
)

Arguments

object	CellMig class object, which is a list of data frames resulted from the PreProcessing.
TimeInterval	A numeric value of the time elapsed between successive frames in the time-lapse stack.
PtSplot	A logical vector that allows generating individual plots of persistence time vs speed per cell. Default is TRUE.
AllPtSplot	A logical vector that allows generating a plot of persistence time vs speed for all cells. Default is TRUE.
ApSplot	A logical vector that allows generating individual plots of angular persistence vs speed per cell. Default is TRUE.
AllApSplot	A logical vector that allows generating a plot of angular persistence vs speed of all cells. Default is TRUE.
export	if 'TRUE' (default), exports function output
ExpName	string, indicates the name of the experiment. Can be NULL

Value

An CellMig class object with a data frame and plots. The data frame is stored in the PerAanSpeedtable slot.

Author(s)

Salim Ghannoum [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

rmTD <- get(data(preProcCellMig))
rmTD <- PerAndSpeed(rmTD,TimeInterval=10, export=FALSE)

ocbe-uio/cellmigRation documentation built on Dec. 16, 2021, 10:59 p.m.