phsc.cmd.phyloscanner.one.resume.combinewindows: Generate bash command to combine single window resumes of a...

In olli0601/Phyloscanner.R.utilities:

Generate bash command to combine single window resumes of a phyloscanner run

Description

This function generates bash commands to resume a single phyloscanner run, from the point where all read alignments and read phylogenies were created. The bash script can be called via 'system' in R, or written to file to run on a UNIX system.

Usage

phsc.cmd.phyloscanner.one.resume.combinewindows(prefix.infiles, pty.args)

Arguments

prefix.infiles	File name that points phyloscanner output.
pty.args	List of phyloscanner input variables. See examples.

Value

Character string of phyloscanner commands.

olli0601/Phyloscanner.R.utilities documentation built on April 16, 2024, 5:44 a.m.