phsc.plot.windowsummaries.for.pairs: Plot window summaries for pairs of individuals

In olli0601/Phyloscanner.R.utilities:

Plot window summaries for pairs of individuals

Description

This function plots the window summaries for each pair of individuals.

Usage

phsc.plot.windowsummaries.for.pairs(
  plot.select,
  rpw2,
  rplkl2,
  plot.file,
  cols = NULL,
  group = NA,
  widths = unit(c(4, 6), "null"),
  heights = unit(c(2, 3.5, 4, 5), "null"),
  height = 9
)

Arguments

plot.select	Select pairs for plotting. This is specified as a data.table with columns PTY_RUN, MALE_SANGER_ID, FEMALE_SANGER_ID, LABEL. Each pair has assigned a label that is used as title.
rpw2	Window assignments for pairs of individuals. This is specified as a data.table with columns PTY_RUN, MALE_SANGER_ID, FEMALE_SANGER_ID, W_FROM, ID_R_MAX, ID_R_MIN, TYPE.
rplkl2	Posterior probability assignments for pairs of individuals. This is specified as a data.table with columns PTY_RUN, MALE_SANGER_ID, FEMALE_SANGER_ID, TYPE, KEFF, POSTERIOR_ALPHA, POSTERIOR_BETA
plot.file	Name of output file
cols	Colours for relationship types. This is specified as a named vector, which can be null.
group	Relationship group name. This is used to define default colours if cols==NULL.
heights	Heights of subfigures in grid.layout. This is overwritten if group is specified.
height	Total height of pdf in inches. This is overwritten if group is specified.
widhts	Widths of subfigures in grid.layout. This is overwritten if group is specified.

Value

Plots to file.

olli0601/Phyloscanner.R.utilities documentation built on April 26, 2024, 11:29 a.m.