phsc.plot.windowassignments.by.runs: Compare window assignments by different phyloscanner runs

In olli0601/Phyloscanner.R.utilities:

Compare window assignments by different phyloscanner runs

Description

This function plots the window assignments for each pair of individuals and for several phyloscanner runs.

Usage

phsc.plot.windowassignments.by.runs(
  rplkl2,
  plot.file,
  plot.prob.select,
  cols.run,
  cols = NULL,
  group = NA,
  height = 40
)

Arguments

rplkl2	Posterior probability assignments for pairs of individuals. This is specified as a data.table with columns RUN, PTY_RUN, MALE_SANGER_ID, FEMALE_SANGER_ID, TYPE, KEFF, POSTERIOR_ALPHA, POSTERIOR_BETA
plot.file	Name of output file
cols	Colours for relationship types. This is specified as a named vector, which can be null.
group	Relationship group name. This is used to define default colours if cols==NULL.
height	Total height of pdf in inches. This is overwritten if group is specified.

Value

Plots to file.

olli0601/Phyloscanner.R.utilities documentation built on May 6, 2024, 8:11 p.m.