phsc.get.most.likely.transmission.chains: Reconstruct most likely transmission chains
In olli0601/Phyloscanner.R.utilities:
View source: R/phyloscan.fun.private.R
phsc.get.most.likely.transmission.chains R Documentation
Reconstruct most likely transmission chains
Description
This function reconstructs most likely transmission chains
from the scores associated with directed and undirected edges.
Usage
phsc.get.most.likely.transmission.chains(rtnn, verbose = 0, method = "Edmonds")
Arguments
rtn
data.table with network scores for all individuals that could form a network. Must contain columns 'ID1','ID2','IDCLU','GROUP','TYPE','POSTERIOR_SCORE','KEFF'.
Value
new data.table with added columns LINK_12 LINK_21 (either 1 or 0), and MX_PROB_12 MX_PROB_21 (associated posterior probabilities)
olli0601/Phyloscanner.R.utilities documentation built on April 26, 2024, 11:29 a.m.
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View source: R/phyloscan.fun.private.R
| phsc.get.most.likely.transmission.chains | R Documentation |
Reconstruct most likely transmission chains
Description
This function reconstructs most likely transmission chains from the scores associated with directed and undirected edges.
Usage
phsc.get.most.likely.transmission.chains(rtnn, verbose = 0, method = "Edmonds")
Arguments
rtn |
data.table with network scores for all individuals that could form a network. Must contain columns 'ID1','ID2','IDCLU','GROUP','TYPE','POSTERIOR_SCORE','KEFF'. |
Value
new data.table with added columns LINK_12 LINK_21 (either 1 or 0), and MX_PROB_12 MX_PROB_21 (associated posterior probabilities)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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