Files in omnideconv/SimBu
Simulate Bulk RNA-seq Datasets from Single-Cell Datasets
.BBSoptions
.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/bioc_check.yml
.github/workflows/pkgdown.yml
.github/workflows/roxygenize.yml
.github/workflows/test-coverage.yml
.github/workflows/test.yml
.gitignore
.pre-commit-config.yaml
.prettierignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/access_sfaira.R
R/basilisk.R
R/census.R
R/dataset.R
R/setup.R
R/simulator.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
configure
configure.win
inst/extdata/anndata.h5ad
inst/extdata/anndata_rev.h5ad
inst/script/sample_data_generation.txt
longtests/testthat.R
longtests/testthat/test_dataset.R
man/SimBu.Rd
man/calc_scaling_vector.Rd
man/census.Rd
man/census_monocle.Rd
man/check_annotation.Rd
man/check_if_tpm.Rd
man/compare_matrix_with_annotation.Rd
man/dataset.Rd
man/dataset_h5ad.Rd
man/dataset_merge.Rd
man/dataset_seurat.Rd
man/dataset_sfaira.Rd
man/dataset_sfaira_multiple.Rd
man/dmode.Rd
man/download_sfaira.Rd
man/download_sfaira_multiple.Rd
man/filter_matrix.Rd
man/generate_summarized_experiment.Rd
man/h5ad_to_adata.Rd
man/merge_scaling_factor.Rd
man/merge_simulations.Rd
man/plot_simulation.Rd
man/save_simulation.Rd
man/setup_sfaira.Rd
man/sfaira_overview.Rd
man/simulate_bulk.Rd
man/simulate_sample.Rd
tests/testthat.R
tests/testthat/test_dataset.R
tests/testthat/test_simulator.R
vignettes/.gitignore
vignettes/SimBu.Rmd
vignettes/references.bib
vignettes/sfaira_vignette.Rmd
vignettes/simulator_input_output.Rmd
vignettes/simulator_scaling_factors.Rmd
