R/basilisk.R

In omnideconv/SimBu: Simulate Bulk RNA-seq Datasets from Single-Cell Datasets

# dependencies for sfaira and anndata0.7.6 (taken from zellkonverter package)
SimBu_env <- basilisk::BasiliskEnvironment(
  envname = "SimBu_env_1_1_1",
  pkgname = "SimBu",
  packages = c(
    "python==3.9",
    "anndata==0.7.6",
    "h5py==3.2.1",
    "hdf5==1.10.6",
    "natsort==7.1.1",
    "numpy==1.20.2",
    "packaging==20.9",
    "pandas==1.2.4",
    "scipy==1.6.3",
    "sqlite==3.35.5"
  ),
  pip = c(
    "sfaira==0.3.12",
    "tables==3.7.0"
  )
)