makeBoxPlot: makeBoxPlot - creates boxplot of contigs included in the...

In oneillkza/ContiBAIT: Improves Early Build Genome Assemblies using Strand-Seq Data

Description

makeBoxPlot – creates boxplot of contigs included in the analysis vs those excluded

Usage

## S4 method for signature 'ChrTable,LinkageGroupList'
makeBoxPlot(chrTable, linkage.contigs)

Arguments

chrTable	A GRanges object consisting of contigs and positions. A meta column called 'names' must be present with names in the same format as those from linkage.contigs. Generated by makeChrTable().
linkage.contigs	A list of clustered contigs, generated by clusterContigs()

Value

a box plot of included and excluded contigs

Examples

#make an example barplot of data

data("exampleLGList")
data("exampleChrTable")
makeBoxPlot(exampleChrTable, exampleLGList)

oneillkza/ContiBAIT documentation built on June 1, 2020, 5:49 a.m.