orderContigsGreedy: Function to order contigs within a single linkage group using...

Description Usage Arguments Value

View source: R/orderContigsGreedy.R

Description

Function to order contigs within a single linkage group using a greedy algorithms Attempt to order contigs within

Usage

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orderContigsGreedy(linkageGroupReadTable, randomAttempts = 75,
  nProcesses = 1, verbose = TRUE)

Arguments

linkageGroupReadTable

dataframe of strand calls (product of combineZeroDists or preprocessStrandTable)

randomAttempts

number of times to repeat the greedy algortihm with a random restart

nProcesses

number of processes to attempt ordering in parallel

verbose

whether to print verbose messages

Value

list of two members: 1) contig names in order, 2) the original data.frame entered into function correctly ordered


oneillkza/ContiBAIT documentation built on June 1, 2020, 5:49 a.m.