orderContigsTSP: Attempt to order contigs within linkage groups using...

Description Usage Arguments Value

View source: R/orderContigsTSP.R

Description

Attempt to order contigs within linkage groups using travelling salesperson algorithm

Usage

1
orderContigsTSP(linkageGroupReadTable, reps)

Arguments

linkageGroupReadTable

dataframe of strand calls (product of combineZeroDists or preprocessStrandTable)

reps

Number of repetitions for he 2-opt TSP solver algorithm

Value

list of two members: 1) contig names in order, 2) the original data.frame entered into function correctly ordered


oneillkza/ContiBAIT documentation built on June 1, 2020, 5:49 a.m.