ContigOrdering: A class for storing contig ordering of a linkage group

Description Usage Arguments Value Examples

View source: R/AllClasses.R

Description

This class is a matrix of two character vectors that represent the calculated ordering of a linkage group. The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries in the calculated order. The second element is the names of names of each contig in the calculated order.

Usage

1
ContigOrdering(ordering = character())

Arguments

ordering

a matrix of two character vectors that represent the calculated ordering of a linkage group. The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries in the calculated order. The second element is the names of names of each contig in the calculated order.

Value

a ContigOrdering

Examples

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2
thisOrdering <- ContigOrdering(matrix(ncol=2, c( "LG1.11", "chr2:1000820-2001640", 
			"LG1.1", "chr2:3002461-4003281")))

oneillkza/ContiBAIT documentation built on June 1, 2020, 5:49 a.m.