get_samples_by_gse: retrieve internal id, name (GSM), description from all...

In onertipaday/rcompass: R Client for the COMPASS GrapgQL API

Description

retrieve internal id, name (GSM), description from all samples with experiment id (GSE)

Usage

get_samples_by_gse(
  compendium = "vespucci",
  normalization = "tpm",
  experimentAccessId = NULL
)

Arguments

compendium	A string - the selected compendium
normalization	A string - 'tpm' (as default), 'limma' or 'legacy'
experimentAccessId	A string - GSE (GEO Series (experiment) access id)

Value

A data.frame with three columns: sampleId, sampleName, sampleDescription

Examples

## Not run: 
get_samples_by_gse(experimentAccessId = "GSE98923", normalization = "legacy")

## End(Not run)

onertipaday/rcompass documentation built on Sept. 18, 2021, 5:13 p.m.