get_samplesets_ranking: get_samplesets_ranking

In onertipaday/rcompass: R Client for the COMPASS GrapgQL API

Description

get_samplesets_ranking

Usage

get_samplesets_ranking(
  compendium = "vespucci",
  normalization = "legacy",
  rankTarget = "samplesets",
  rank = "magnitude",
  biofeaturesNames = NULL,
  top_n = 50,
  useIds = FALSE
)

Arguments

compendium	A string - the selected compendium
normalization	A string ('legacy' as default)
rankTarget	A string ('sampleset' as default)
rank	A string ('magnitude' as default)
biofeaturesNames	A vector of character strings (here gene_names)
top_n	A numeric - an integer for selecting the top ranked samplesets
useIds	A logical - TRUE as default

Value

A data.frame with three columns id, name, value

Examples

## Not run: 
get_samplesets_ranking(biofeaturesNames=c("QmlvRmVhdHVyZVR5cGU6MQ==",
"QmlvRmVhdHVyZVR5cGU6Mg==","QmlvRmVhdHVyZVR5cGU6Mw==","QmlvRmVhdHVyZVR5cGU6NA==",
 "QmlvRmVhdHVyZVR5cGU6NQ=="), useIds = TRUE, top_n = 10)
 
## End(Not run)

onertipaday/rcompass documentation built on Sept. 18, 2021, 5:13 p.m.