allTabs: An example of an object of class "allTableList" resulting...

In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

An example of an object of class "allTableList" resulting from a call to 'buildEnrichTable'

Description

The result of generating all contingency tables of mutual enrichment, in a pairwise fashion, between the gene lists in data allOncoGeneLists along GO levels 3 to 10 for all three GO ontologies, BP, MF and CC. Object 'allTabs' is a list of length 3 with one element for each GO ontology: allTabs$BP, allTabs$MF and allTabs$CC. Each one of these lists is itself a list of length 11, e.g., allTabs$BP$'level 3', allTabs$BP$'level 4', etc. to allTabs$BP$'level 10'. Finally, each one of these lists contains all contingency tables of mutual enrichment, in a pairwise fashion, for the gene lists in data allOncoGeneLists. These results are based on gene lists which are not automatically updated, take them just as an illustrative example because the gene lists, and the GO, may change along time. The present version of these data was generated under Bioconductor version 3.17.

Usage

data(allTabs)

Format

An object of class "allTableList" inheriting from class "list".

pablof1988/goSorensen documentation built on July 21, 2023, 8:38 a.m.