cancerEquivSorensen: An example of an object of class "AllEquivSDhtest" resulting...

In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

An example of an object of class "AllEquivSDhtest" resulting from a call to 'allEquivTestSorensen'

Description

The Sorensen-Dice test (normal asymptotic version) performed on the cancer gene lists in data allOncoGeneLists which may be charged from this package. The test is iterated for all GO ontologies and for GO levels 3 to 10. These results are not automatically updated for changes in these gene lists and Bioconductor or Go updates, take them just as an illustrative example. The present version was obtained under Bioconductor 3.17.

Usage

data(cancerEquivSorensen)

Format

An object of class "AllEquivSDhtest" inheriting from class "list". Each one of its elements, named BP, CC and MF respectively, corresponds to a GO ontology. It is itself a list of length 8 whose elements are named as "Level 3" to "Level 10". For each combination of ontology and level, there is an object of class "equivSDhtestList" codifying the result of all pairwise tests between these cancer gene lists.

Details

For each ontology and GO level, the result contains the result of all pairwise tests of equivalence between the cancer gene lists.

Source

http://www.bushmanlab.org/links/genelists

pablof1988/goSorensen documentation built on July 21, 2023, 8:38 a.m.