tab_atlas.sanger_BP3: Cross-tabulation of enriched GO items at level 3 of ontology...
In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)
tab_atlas.sanger_BP3 R Documentation
Cross-tabulation of enriched GO items at level 3 of ontology BP in two gene lists
Description
From the "Cancer gene list" of Bushman Lab, a collection of gene lists related with cancer,
for gene lists "Atlas" and "Sanger", this dataset is the cross-tabulation of all GO items
of ontology BP at level 3 which are:
Enriched in both lists, enriched in sanger but not in atlas, non-enriched in sanger
but enriched in atlas and non-enriched in both lists.
Take it just as an illustrative example, non up-to-date for changes in the gene lists
or changes in the GO. The present version was obtained under Bioconductor 3.17.
Usage
data(tab_atlas.sanger_BP3)
Format
An object of class "table" representing a 2x2 contingency table.
Source
pablof1988/goSorensen documentation built on July 21, 2023, 8:38 a.m.
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| tab_atlas.sanger_BP3 | R Documentation |
Cross-tabulation of enriched GO items at level 3 of ontology BP in two gene lists
Description
From the "Cancer gene list" of Bushman Lab, a collection of gene lists related with cancer, for gene lists "Atlas" and "Sanger", this dataset is the cross-tabulation of all GO items of ontology BP at level 3 which are: Enriched in both lists, enriched in sanger but not in atlas, non-enriched in sanger but enriched in atlas and non-enriched in both lists. Take it just as an illustrative example, non up-to-date for changes in the gene lists or changes in the GO. The present version was obtained under Bioconductor 3.17.
Usage
data(tab_atlas.sanger_BP3)
Format
An object of class "table" representing a 2x2 contingency table.
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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