waldman_atlas.BP.4: An example of an object of class "equivSDhtest" resulting...

In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

An example of an object of class "equivSDhtest" resulting from a call to function 'equivSorensenTest'

Description

The Sorensen-Dice equivalence test between the gene lists "waldman" and "atlas" taken from dataset allOncoGeneLists which may be charged from this package. To perform the test, the information in these gene lists was summarized by means of contingency tables of mutual GO item enrichment, for all GO items at level 4 of the BP ontology. The tests were performed for an equivalence limit d0 = 0.4444 and a confidence level conf.int = 0.95. Based on a version of these gene lists that may be non up-to-date, take just as an illustrative example. The present result was obtained under Bioconductor 3.17.

Usage

data(waldman_atlas.BP.4)

Format

An object of class "equivSDhtest" inheriting from class "list".

Source

http://www.bushmanlab.org/links/genelists

pablof1988/goSorensen documentation built on July 21, 2023, 8:38 a.m.