waldman_atlas.BP.4 | R Documentation |
The Sorensen-Dice equivalence test between the gene lists "waldman" and "atlas" taken from dataset
allOncoGeneLists
which may be charged from this package.
To perform the test, the information in these gene
lists was summarized by means of contingency tables of mutual GO term enrichment, for all GO terms
at level 4 of the BP ontology. The tests were performed for an equivalence
limit d0 = 0.4444 and a confidence level conf.int = 0.95.
Based on a version of these gene lists that may be non up-to-date, take just as an illustrative example.
The present result was obtained under Bioconductor 3.17.
data(waldman_atlas.BP.4)
An object of class "equivSDhtest" inheriting from class "list".
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