RegressOut: Regress out technical effects and cell cycle
In paodan/studySeu: Seurat : R toolkit for single cell genomics
Description
Usage
Arguments
Value
Description
Remove unwanted effects from scale.data
Usage
1
2
RegressOut(object, latent.vars, genes.regress = NULL, model.use = "linear",
use.umi = F, do.scale = T, do.center = T, scale.max = 10)
Arguments
object
Seurat object
latent.vars
effects to regress out
genes.regress
gene to run regression for (default is all genes)
do.scale
Z-normalize the residual values (default is TRUE)
Value
Returns Seurat object with the scale.data (object@scale.data) genes returning the residuals from the regression model
paodan/studySeu documentation built on May 23, 2019, 3:06 p.m.
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Description Usage Arguments Value
Description
Remove unwanted effects from scale.data
Usage
1 2 | RegressOut(object, latent.vars, genes.regress = NULL, model.use = "linear",
use.umi = F, do.scale = T, do.center = T, scale.max = 10)
|
Arguments
object |
Seurat object |
latent.vars |
effects to regress out |
genes.regress |
gene to run regression for (default is all genes) |
do.scale |
Z-normalize the residual values (default is TRUE) |
Value
Returns Seurat object with the scale.data (object@scale.data) genes returning the residuals from the regression model
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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