API for paodan/studySeu
Seurat : R toolkit for single cell genomics

Global functions
BuildSNN Man page
CalcConnectivity Source code
CalcSNNDense Source code
CalcSNNSparse Source code
DBclust_dimension Man page
FindClusters Man page
GroupSingletons Source code
Hbeta Source code
Kclust_dimension Man page
KullbackFun Source code
RegressOut Man page
RunClassifier Source code
RunModularityClustering Source code
ScaleData Man page
ValidateClusters Man page
ValidateSpecificClusters Man page
addImputedScore Man page
addMetaData Man page
addSmoothedScore Man page
ainb Source code
all.neighbor.cells Source code
anotinb Source code
arrange Source code
auc Source code
aucFxn Source code
average.expression Man page
average.pca Man page
batch.gene Man page
bimod.diffExp.test Source code
bimodLikData Source code
buildClusterTree Man page
calc.drop.prob Source code
calcFP Source code
calcMedians Source code
calcResid Source code
calcResidLog Source code
calcTP Source code
cell.centroid Source code
cell.centroid.x Source code
cell.centroid.y Source code
cellPlot Man page
cluster.alpha Man page
compareBins Source code
comparePCA Source code
corCellWeightFast Source code
covCellWeightFast Source code
custom.dist Source code
cv Source code
d2p_cell Source code
debugdmvnorm Source code
diff.t.test Man page
diffAUC Source code
diffExp.test Man page
diffLRT Source code
diffTobit Source code
dim.plot Man page
doHeatMap Man page
doKMeans Man page
dot.plot Man page
empP Source code
exact.cell.centroid Source code
expAlpha Source code Source code
expMean Source code
expSD Source code
expVar Source code
extract_field Source code
facet_wrap_labeller Source code
feature.heatmap Man page
feature.plot Man page
fetch.closest Source code
fetch.data Man page
fetch.mincells Source code
find.markers Man page
find.markers.node Man page
findNGene Source code
find_all_markers Man page
fit.gene.k Man page
genCols Source code
genePlot Man page
genes.ca.range Source code
get.centroids Man page
getAB Source code
getCoefs Source code
getDescendants Source code
getLeftDecendants Source code
getRightDecendants Source code
getSmooth Source code
getStat Source code
getStat1 Source code
getStat2 Source code
getStat3 Source code
gg.legend.pts Source code
gg.legend.text Source code
gg.xax Source code
gg.yax Source code
gtCut Source code
heatmap2NoKey Source code
humpCt Source code
humpMean Source code
humpVar Source code
icHeatmap Man page
icTopGenes Man page
ica Man page
ica.plot Man page
init Source code
initial.mapping Man page
iter.k.fit Source code
jackF Source code
jackRandom Source code
jackStraw Man page
jackStrawF Source code
jackStrawPlot Man page
kill.ifnull Source code
lasso.fxn Source code
logMeanMinus Source code
logVarDivMean Source code
logVarMinus Source code
logVarMinus2 Source code
log_add Source code
makeAlnPlot Source code
makeScorePlot2 Source code
map.cell.score Source code
marker.auc.test Source code
marker.test Man page
mean.var.plot Man page
meanNormFunction Source code
meanVarPlot Source code
mergeDescendents Source code
minmax Source code
minusc Source code
minusr Source code
multiplotList Source code
myPalette Source code
nb.residuals Source code
neighbor.cells Source code
normal.sample Source code
pcHeatmap Man page
pcTopCells Man page
pcTopGenes Man page
pca Man page
pca.plot Man page
pca.sig.genes Man page
plot.Vln Source code
plotClusterTree Man page
plotNoiseModel Man page
plotVln Source code
print.pca Man page
project.pca Man page
project_map Source code
quickRNAHuman Source code
r_wrapper Source code
refined.mapping Man page
regression.sig Source code
removeNode Source code
removeRedundantClique Source code
rename.ident Man page
reorder.ident Man page
rp Source code
run_diffusion Man page
run_tsne Man page
same Source code
scaleSCMatrix2 Source code
sensitivityCurve Source code
set.all.ident Man page
set.ident Man page
set.ifnull Source code
setCol Source code
setRow Source code
setWt1 Source code
setWtMatrix1 Source code
setup Man page
seurat Man page
seurat-class Man page
shift.cell Source code
shuffleMatRow Source code
situ3d Source code
sizeCliqueIntersection Source code
slimdmvnorm Source code
slimdmvnorm_nosum Source code
sort.column Source code
sub.string Source code
subSort Source code
subc Source code
subr Source code
subsetCells Man page
subsetData Man page
subsetMatrix Source code
tobit.diffExp.test Source code
tobit.test Man page
tobit_fitter Source code
topGenesForDim Source code
translate.dim.code Source code
tsne.plot Man page
viz.ica Man page
viz.pca Man page
vlnPlot Man page
vminusc Source code
vp.layout Source code
vsubc Source code
weighted.euclidean Source code
which.cells Man page
whichNotZero Source code
writ.table Source code
wtCov Source code
zf.anchor.map Source code
zf.anchor.render Source code
zf.cells.render Source code
zf.insitu.dorsal Source code
zf.insitu.lateral Source code
zf.insitu.side Source code
zf.insitu.vec.lateral Source code
zf.insitu.ventral Source code
paodan/studySeu documentation built on Jan. 15, 2018, 12:50 a.m.