subsetData: Return a subset of the Seurat object
In paodan/studySeu: Seurat : R toolkit for single cell genomics

Description Usage Arguments Value

Creates a Seurat object containing only a subset of the cells in the original object. Takes either a list of cells to use as a subset, or a parameter (for example, a gene), to subset on.

1
2
3

subsetData(object, cells.use = NULL, subset.name = NULL,
  accept.low = -Inf, accept.high = Inf, do.center = TRUE,
  do.scale = TRUE, ...)

`object`	Seurat object
`cells.use`	A vector of cell names to use as a subset. If NULL (default), then this list will be computed based on the next three arguments. Otherwise, will return an object consissting only of these cells
`subset.name`	Parameter to subset on. Eg, the name of a gene, PC1, a column name in object@data.info, etc. Any argument that can be retreived using fetch.data
`accept.low`	Low cutoff for the parameter (default is -Inf)
`accept.high`	High cutoff for the parameter (default is Inf)
`do.center`	Recenter the new object@scale.data
`do.scale`	Rescale the new object@scale.data
`...`	Additional arguments to be passed to fetch.data (for example, use.imputed=TRUE)