diff.t.test: Differential expression testing using Student's t-test

In paodan/studySeu: Seurat : R toolkit for single cell genomics

Description

Identify differentially expressed genes between two groups of cells using the Student's t-test

Usage

diff.t.test(object, cells.1, cells.2, genes.use = NULL, thresh.use = log(2),
  print.bar = TRUE)

Arguments

object	Seurat object
cells.1	Group 1 cells
cells.2	Group 2 cells
genes.use	Genes to test. Default is to use all genes.
thresh.use	Limit testing to genes which show, on average, at least X-fold difference (log-scale) between the two groups of cells. Increasing thresh.use speeds up the function, but can miss weaker signals.
print.bar	Print a progress bar once expression testing begins (uses pbapply to do this)

Value

Returns a p-value ranked matrix of putative differentially expressed genes.

paodan/studySeu documentation built on May 23, 2019, 3:06 p.m.