addSmoothedScore: Calculate smoothed expression values

Description Usage Arguments

Description

Smooths expression values across the k-nearest neighbors based on dimensional reduction

Usage

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addSmoothedScore(object, genes.fit = NULL, dim.1 = 1, dim.2 = 2,
  reduction.use = "tsne", k = 30, do.log = FALSE, do.print = FALSE)

Arguments

object

Seurat object

genes.fit

Genes to calculate smoothed values for

dim.1

Dimension for x-axis (default 1)

dim.2

Dimension for y-axis (default 2)

reduction.use

Which dimensionality reduction to use. Default is "tsne", can also be "pca", or "ica", assuming these are precomputed.

do.print

Print progress (output the name of each gene after it has been imputed).

inheritParams

Seurat object


paodan/studySeu documentation built on May 23, 2019, 3:06 p.m.