batch.gene: Identify potential genes associated with batch effects
In paodan/studySeu: Seurat : R toolkit for single cell genomics

Description Usage Arguments Value

Test for genes whose expression value is strongly predictive of batch (based on ROC classification). Important note: Assumes that the 'batch' of each cell is assigned to the cell's identity class (will be improved in a future release)

1 2	batch.gene(object, idents.use, genes.use = NULL, auc.cutoff = 0.6, thresh.use = 0)

`object`	Seurat object
`idents.use`	Batch names to test
`genes.use`	Gene list to test
`auc.cutoff`	Minimum AUC needed to qualify as a 'batch gene'
`thresh.use`	Limit testing to genes which show, on average, at least X-fold difference (log-scale) in any one batch