tsne.plot: Plot tSNE map

In paodan/studySeu: Seurat : R toolkit for single cell genomics

Description

Graphs the output of a tSNE analysis Cells are colored by their identity class.

Usage

tsne.plot(object, do.label = FALSE, label.pt.size = 1, label.cex.text = 1,
  label.cols.use = NULL, ...)

Arguments

object	Seurat object
do.label	FALSE by default. If TRUE, plots an alternate view where the center of each cluster is lebeled
label.pt.size	If do.label is set, the point size
label.cex.text	If label.cex.text is set, the size of the text labels
label.cols.use	If do.label is set, the color palette to use for the points
...	Additional parameters to dim.plot, for example, which dimensions to plot.
color.scramble	If do.label is set, scramble the color palette (can help to distinguish adjacent clusters)

Details

This function is a wrapper for dim.plot. See ?dim.plot for a full list of possible arguments which can be passed in here.

See Also

dim.plot

paodan/studySeu documentation built on May 23, 2019, 3:06 p.m.