phaseMatrix2Array: phaseMatrix2Array

Description Usage Arguments Details Author(s) Examples

Description

used to convert the phase from the visually friendly matrix to array.

Usage

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phaseMatrix2Array(x, ...)

## S4 method for signature 'matrix'
phaseMatrix2Array(x, dimnames = NULL, ...)

Arguments

x

matrix see examples

...

arguments to forward to internal functions

dimnames

list with dimnames

Details

A more effectice way of store the phase data in the ASEset object

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples

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#load data
data(ASEset)
a <- ASEset

#example phase matrix
p1 <- matrix(sample(c(1,0),replace=TRUE, size=nrow(a)*ncol(a)),nrow=nrow(a), ncol(a))
p2 <- matrix(sample(c(1,0),replace=TRUE, size=nrow(a)*ncol(a)),nrow=nrow(a), ncol(a))
p <- matrix(paste(p1,sample(c("|","|","/"), size=nrow(a)*ncol(a), replace=TRUE), p2, sep=""),
	nrow=nrow(a), ncol(a))

ar <- phaseMatrix2Array(p)

pappewaio/AllelicImbalance documentation built on April 11, 2020, 2:58 a.m.