| Create_Table | A Create_Table Function |
| Create_Table_Doublets | A Create_Table_Doublets Function |
| Doublet_Detection_DF | A Doublet_Detection_DF Function |
| Doublet_Detection_DF_DD | A Doublet_Detection_DF_DD Function |
| Doublet_Detection_SCDShybrid | A Doublet_Detection_SCDShybrid Function |
| Filter_Genes_from_Variable_Genelist | A Filter_Genes_from_Variable_Genelist Function |
| Final_ChosenPCA_and_Res_Harmony | A Final_ChosenPCA_and_Res_Harmony Function |
| load_Colors | A load_Colors Function |
| load_Packages_SeuratAnalysis | A load_Packages_SeuratAnalysis Function |
| Make_Regular_Plots | A Make_Regular_Plots Function |
| Perform_CCA | A Perform_CCA Function |
| Perform_CCA_Diff_PCAdim_res | A Perform_CCA_Diff_PCAdim_res Function |
| Perform_DGE_ONEvsALL | A Perform_DGE_ONEvsALL Function |
| Perform_GeneOntology_Analysis_Using_Marker_Genes | A Perform_GeneOntology_Analysis_Using_Marker_Genes Function... |
| Perform_Pathway_Analysis_Escape_SSGSEA | A Perform_Pathway_Analysis_Escape_SSGSEA Function |
| Perform_Pathway_Analysis_FGSEA | A Perform_Pathway_Analysis_FGSEA Function |
| Perform_Trajectory_Analysis | A Perform_Trajectory_Analysis Function |
| Process_Seurat_Object_Initial_Filter_Genes_from_Variable_Genelist | A... |
| Read10X_Norm | A Read10X_Norm Function |
| Read10X_RemoveDoublets_Norm | A Read10X_RemoveDoublets_Norm Function |
| Test_Cluster_Resolution_Harmony | A Test_Cluster_Resolution_Harmony Function |
| Test_PCA_dim_Harmony | A Test_PCA_dim_Harmony Function |
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