Make_Regular_Plots: A Make_Regular_Plots Function

In parveendabas/SCA: What the Package Does (One Line, Title Case)

A Make_Regular_Plots Function

Description

This function allows you to perform differential gene analysis.

Usage

Make_Regular_Plots(
  Temp.object,
  saveDIR,
  ColNamesToPlot = ColNamesToPlot,
  ColPaletteToPlot = ColPaletteToPlot,
  SuffixName = "QC_Plots",
  Species = "hsa",
  HistogramPlot = TRUE,
  VlnPlot = TRUE,
  QCumapPlots = TRUE,
  TablePlot = TRUE,
  UMAPPlot = TRUE
)

Arguments

Temp.object	Seurat objects to be used for the QC plots.
saveDIR	Directory to save the plots.
ColNamesToPlot	Vector of identities to plot
ColPaletteToPlot	list of color palettes to plot for the identities
SuffixName	Suffix. to be added in the directory name as
Species	Species Name. Valid options are hsa or mmu
HistogramPlot	Plot Histograms or not
VlnPlot	Plot Violins or not
QCumapPlots	Plot QC UMAP or not
TablePlot	Plot Tables or not
UMAPPlot	Plot UMAP or not

Examples

Make_Regular_Plots()

parveendabas/SCA documentation built on Sept. 19, 2022, 8:31 a.m.