Perform_CCA_Diff_PCAdim_res: A Perform_CCA_Diff_PCAdim_res Function

In parveendabas/SCA: What the Package Does (One Line, Title Case)

A Perform_CCA_Diff_PCAdim_res Function

Description

This function allows you to perform CCA at different res.

Usage

Perform_CCA_Diff_PCAdim_res(
  Sampleall.object,
  NameInpdf,
  saveDIR,
  TempCCAdimchosenlist = c(15, 20, 30),
  FeatureUseCount = 2500,
  plots = TRUE,
  save = FALSE
)

Arguments

Sampleall.object	A list of Seurat objects between which to find anchors for downstream integration.
NameInpdf	Path to save Quality plots and RDS data.
saveDIR	Suffix to be added to CCA files.
FeatureUseCount	A numeric value. This will call SelectIntegrationFeatures to select the provided number of features to be used in anchor finding
plots	Save CCA plots
save	Save integrated CCA RDS Seurat object

Examples

Perform_CCA_Diff_PCAdim_res()

parveendabas/SCA documentation built on Sept. 19, 2022, 8:31 a.m.