Create_Table_Doublets: A Create_Table_Doublets Function

In parveendabas/SCA: What the Package Does (One Line, Title Case)

A Create_Table_Doublets Function

Description

This function create table for Seurat Normalzied data.

Usage

Create_Table_Doublets(
  SCdata,
  BeforeFilter,
  Doublets,
  SampleName = NULL,
  mincells = 3,
  mingenes = 500,
  mtpercent = 20,
  rbpercent = 50,
  nRows = 40,
  coreFont = 2.5,
  colheadFont = 2.5,
  rowheadFont = 2.5,
  titlesize = 25
)

Arguments

SCdata	Seurat object to count number of cells.
BeforeFilter	Total number of cells before filtering
Doublets	Total number of Doublets detected
SampleName	Sample Name
mincells	Include features detected in at least this many cells. Will subset the counts matrix as well. To reintroduce excluded features, create a new object with a lower cutoff.
mingenes	Include cells where at least this many features are detected.
mtpercent	Include cells reporting at most this much mitochondrial transcript percentage.
rbpercent	Include cells reporting at most this much ribosomal transcript percentage.
nRows	Maximum number of rows to be prined.
coreFont	core Font Size.
colheadFont	colhead Font Size.
rowheadFont	rowhead Font Size.
titlesize	titlesize Font Size.

Examples

Create_Table_Doublets()

parveendabas/SCA documentation built on Sept. 19, 2022, 8:31 a.m.