Doublet_Detection_DF: A Doublet_Detection_DF Function

In parveendabas/SCA: What the Package Does (One Line, Title Case)

A Doublet_Detection_DF Function

Description

This function allows you to detect doublets using both Doublet_Finder algorithm.

Usage

Doublet_Detection_DF(
  matrix.DIR,
  saveDIR,
  Sample,
  Species = "hsa",
  FeatureUseCount = 2500,
  PCAnum = 10,
  resClus = 0.5,
  mincells = 3,
  mingenes = 500,
  mtpercent = 20,
  rbpercent = 50,
  ClusPallette = ClusPallette,
  DoubletFinder = TRUE,
  plotCCgene = TRUE
)

Arguments

matrix.DIR	Raw10X data Directory
saveDIR	Path to save Quality plots and RDS data.
Sample	Sample Name.
Species	Species Name. Valid options are hsa or mmu.
FeatureUseCount	Number of features to select as top variable features; only used when selection.method is set to 'dispersion' or 'vst'
PCAnum	Number of PCs to be used
resClus	Resolution to be used for clustering
ClusPallette	Color pallete to be used for clusters
DoubletFinder	Run DoubletFinder
plotCCgene	Plots TOP2A gene or not

Examples

Doublet_Detection_DF()

parveendabas/SCA documentation built on Sept. 19, 2022, 8:31 a.m.