Doublet_Detection_DF_DD: A Doublet_Detection_DF_DD Function

In parveendabas/SCA: What the Package Does (One Line, Title Case)

A Doublet_Detection_DF_DD Function

Description

This function allows you to detect doublets using both Doublet_Finder and Doublet_Decon algorithms.

Usage

Doublet_Detection_DF_DD(
  SeuratObject,
  saveDIR,
  Sample,
  Species = "hsa",
  FeatureUseCount = 2500,
  PCAnum = 10,
  resClus = 0.5,
  ClusPallette = ClusPallette,
  DoubletFinder = TRUE,
  DoubletDecon = TRUE,
  plotCCgene = TRUE
)

Arguments

SeuratObject	Seurat Object.
saveDIR	Path to save Quality plots and RDS data.
Sample	Sample Name.
Species	Species Name. Valid options are hsa or mmu.
FeatureUseCount	Number of features to select as top variable features; only used when selection.method is set to 'dispersion' or 'vst'
PCAnum	Number of PCs to be used
resClus	Resolution to be used for clustering
ClusPallette	Color pallete to be used for clusters
DoubletFinder	Run DoubletFinder
DoubletDecon	Run DoubletDecon
plotCCgene	Plots TOP2A gene or not

Examples

Doublet_Detection_DF_DD()

parveendabas/SCA documentation built on Sept. 19, 2022, 8:31 a.m.