Process_Seurat_Object_Initial_Filter_Genes_from_Variable_Genelist: A...

In parveendabas/SCA: What the Package Does (One Line, Title Case)

A Process_Seurat_Object_Initial_Filter_Genes_from_Variable_Genelist Function

Description

This function performs a) mt, ribo % calculation, b) Normalization c) Filtering from variable genes d) Scaling of the data

Usage

Process_Seurat_Object_Initial_Filter_Genes_from_Variable_Genelist(
  Temp.object,
  FeatureNum = 2500,
  Species = "hsa",
  mt = TRUE,
  rb = TRUE,
  cc = FALSE
)

Arguments

Temp.object	Seurat Object
FeatureNum	number of Features for variable genes
Species	Species Name. Valid options are hsa or mmu
mt	mitochondrial genes to be removed from Seurat object
rb	ribosomal genes to be removed from Seurat object
cc	CellCycle genes (Converted from Human to Mouse in needed) to be removed from Seurat object

Examples

Process_Seurat_Object_Initial_Filter_Genes_from_Variable_Genelist()

parveendabas/SCA documentation built on Sept. 19, 2022, 8:31 a.m.