dispatch_deg_group: dispatch barcodes to seed and query groups

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

dispatch barcodes to seed and query groups

Description

dispatch barcodes to seed and query groups

Usage

dispatch_deg_group(ter, seed, query, cells, sample, verbose)

Arguments

ter	territories data frame from territoires slot in vesalius_assay object
seed	interger vector indicating which territories should be included in seed group
query	interger vector indicating which territories should be included in query group
cells	cell barcodes
sample	barcodes for each sample type
verbose	logical if progress messages should be outputed

Details

This function generates groups for DEG analysis. It creates different groups depending on what is being parse to both seed and query. This could probably be cleaned up and simplified. Always need to return a list though.

Value

list with seed group and seed id as well as query group and query id

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.