distance_pooling: distance pooling beads of colour segment into seperate...
In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
View source: R/isolate_territories.R
distance_pooling R Documentation
distance pooling beads of colour segment into seperate territories
Description
distance pooling beads of colour segment into seperate territories
Usage
distance_pooling(img, capture_radius, min_spatial_index)
Arguments
img
data frame contain all barcodes of a single sgement
capture_radius
numeric proportion of max distance between beads
to use as distance threshold between beads
min_spatial_index
numeric minimum number of beads that should
be contained in a territory.
Details
Beads that are too far away or bead cluster that are below
the minimum number of spatial indices will all be pooled under the
isolated label. Note that this label is used across color segments.
patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.
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View source: R/isolate_territories.R
| distance_pooling | R Documentation |
distance pooling beads of colour segment into seperate territories
Description
distance pooling beads of colour segment into seperate territories
Usage
distance_pooling(img, capture_radius, min_spatial_index)
Arguments
img |
data frame contain all barcodes of a single sgement |
capture_radius |
numeric proportion of max distance between beads to use as distance threshold between beads |
min_spatial_index |
numeric minimum number of beads that should be contained in a territory. |
Details
Beads that are too far away or bead cluster that are below the minimum number of spatial indices will all be pooled under the isolated label. Note that this label is used across color segments.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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