embed_lsi | R Documentation |
embed in grey scale using latent semantic indexing
embed_lsi(counts, dimensions, features = NULL, remove_lsi_1, verbose = TRUE)
counts |
Seurat object containing normalised counts |
dimensions |
numeric for number of latent space dimensions to use |
features |
custom vector of features |
remove_lsi_1 |
logical if first LSI dimenions should be removed |
verbose |
logical if progress messages should be outputed |
normalised LSI embedding matrix
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