embed_lsi: embed lsi

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

embed lsi

Description

embed in grey scale using latent semantic indexing

Usage

embed_lsi(counts, dimensions, features = NULL, remove_lsi_1, verbose = TRUE)

Arguments

counts	Seurat object containing normalised counts
dimensions	numeric for number of latent space dimensions to use
features	custom vector of features
remove_lsi_1	logical if first LSI dimenions should be removed
verbose	logical if progress messages should be outputed

Value

normalised LSI embedding matrix

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.