embed_umap: embed umap
In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
embed_umap R Documentation
embed umap
Description
embed in gray scale using UMAP projections
Usage
embed_umap(counts, dimensions, features = NULL, verbose)
Arguments
counts
Seurat object containing normalised counts
dimensions
number of PCs to use for the UMAP projections
features
custom vector of features
verbose
logical if progress messages should be outputed
Details
Note that while you can select any number of dimensions
the number of UMAP dimensions will always be 3.
Value
normalised UMAP projection matrix
patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.
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| embed_umap | R Documentation |
embed umap
Description
embed in gray scale using UMAP projections
Usage
embed_umap(counts, dimensions, features = NULL, verbose)
Arguments
counts |
Seurat object containing normalised counts |
dimensions |
number of PCs to use for the UMAP projections |
features |
custom vector of features |
verbose |
logical if progress messages should be outputed |
Details
Note that while you can select any number of dimensions the number of UMAP dimensions will always be 3.
Value
normalised UMAP projection matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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