format_counts_for_deseq2: format counts for DESeq
In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
format_counts_for_deseq2 R Documentation
format counts for DESeq
Description
format counts for DESeq
Usage
format_counts_for_deseq2(seed, query)
Arguments
seed
seed count matrix
query
query count matrix
Details
Always adding a pseudocount of 1 to avoid issues
with 0 counts. We also force coercion to int since DESeq does
not handle numerics nor does it do internal coersion.
Value
DESeq2 object
patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.
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| format_counts_for_deseq2 | R Documentation |
format counts for DESeq
Description
format counts for DESeq
Usage
format_counts_for_deseq2(seed, query)
Arguments
seed |
seed count matrix |
query |
query count matrix |
Details
Always adding a pseudocount of 1 to avoid issues with 0 counts. We also force coercion to int since DESeq does not handle numerics nor does it do internal coersion.
Value
DESeq2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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