future_ves_to_cimg: convert ves embedding to image

In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data

convert ves embedding to image

Description

convert ves embedding to image

Usage

future_ves_to_cimg(i, embeddings, dims, tiles, full_image = TRUE)

Arguments

i	index of embedding to use
embeddings	matrix - embedding matrix
dims	dimensions to use
tiles	tile data frame used to reconstruct images
full_image	logical - should the background be returned as well

Details

using this as a way to run this section in parallel way to slow otherwise. The back ground represents all pixels that are not part of the Spatial data but constiture the "rest" of the pixels in the image. This tends to happen when you have a non rectangular assay that needs to be fitted into a n * p or n * p * d array.

Value

cimg object of embedding

patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.