get_deg_metrics: get DEG metrics from groups
In patrickCNMartin/Vesalius: Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data
View source: R/territory_identity_and_markers.R
get_deg_metrics R Documentation
get DEG metrics from groups
Description
get DEG metrics from groups
Usage
get_deg_metrics(seed, query, params)
Arguments
seed
count matrix for group 1
query
count matrix for group 2
params
parameter list (pval,log_fc, min_pct)
Details
Computes basic metrics such as fold change
and percent of cells containing each gene. This functions
is used to filter out genes so we don't run differential
expression on all genes. We also compute an effct size estimate
by running a power analysis with 2 uneven groups
importFrom pwr pwr.2p2n.test
patrickCNMartin/Vesalius documentation built on April 17, 2025, 11:31 p.m.
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View source: R/territory_identity_and_markers.R
| get_deg_metrics | R Documentation |
get DEG metrics from groups
Description
get DEG metrics from groups
Usage
get_deg_metrics(seed, query, params)
Arguments
seed |
count matrix for group 1 |
query |
count matrix for group 2 |
params |
parameter list (pval,log_fc, min_pct) |
Details
Computes basic metrics such as fold change and percent of cells containing each gene. This functions is used to filter out genes so we don't run differential expression on all genes. We also compute an effct size estimate by running a power analysis with 2 uneven groups importFrom pwr pwr.2p2n.test
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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